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Publikasi Scopus 2024 per tanggal 30 April 2024 (334 artikel)
Publikasi Scopus 2024 per tanggal 30 April 2024 (334 artikel)
Khoeri, Miftahuddin Majid (55994827400); Maladan, Yustinus (57204842592); Salsabila, Korrie (57192272141); Alimsardjono, Lindawati (27967530900); Vermasari, Naritha (58199460100); Puspitasari, Iva (57391069500); Yunita, Rina (56862337800); Tafroji, Wisnu (57118271600); Sarassari, Rosantia (57204038282); Sari, Ratna Fathma (58918622800); Balqis, Sarah Azhari (58919511400); Wahid, Ghina Athyah (58919958100); Purwanto, Diana Shinta (58122204800); Harimurti, Kuntjoro (23473513200); Soebandrio, Amin
Whole genome sequencing data of Streptococcus pneumoniae isolated from Indonesian population
2024
Data in Brief
53
110251
0
https://www.scopus.com/inward/record.uri?eid=2-s2.0-85186693540&doi=10.1016%2fj.dib.2024.110251&partnerID=40&md5=2b3d2e5eb7ff52793ce315c062230464
Eijkman Research Center for Molecular Biology, National Research and Innovation Agency, West Java, Cibinong, Indonesia; Doctoral program in Biomedical, Faculty of Medicine, University of Indonesia, Jakarta, Indonesia; Soetomo Hospital, East Java, Surabaya, Indonesia; Kariadi Hospital, Central Java, Semarang, Indonesia; Haji Adam Malik Hospital, North Sumatera, Medan, Indonesia; Department of Microbiology, Faculty of Medicine, Universitas Sumatera Utara, Medan, Indonesia; Department of Biochemistry, Faculty of Medicine, Sam Ratulangi University, North Sulawesi, Manado, Indonesia; Departement of Internal Medicine, Faculty of Medicine, University of Indonesia, Jakarta, Indonesia; Departement of Clinical Microbiology, Faculty of Medicine, University of Indonesia, Jakarta, Indonesia
Streptococcus pneumoniae is the leading cause of bacterial pneumonia, bacteremia, and meningitis. Indonesia introduced the pneumococcal conjugate vaccine (PCV) nationwide in 2022. In this study, we present whole genome sequence (WGS) data of 94 S. pneumoniae isolates that were obtained from hospitalized patients, healthy children, and adult groups from different regions prior to PCV program in Indonesia. DNA sequences of S. pneumoniae were obtained using the TruSeq Nano DNA kit (Illumina NovaSeq6000 Platform). The genome data of S. pneumoniae features a 1,969,562 bp to 2,741,371 bp circular chromosome with 39–40% G+C content. The genome includes 1935–3319 coding sequences (CDS), 2 to 5 rRNA genes, 43 to 49 tRNA genes, and 56 to 71 ncRNA. These data will be useful for analyzing the serotype, sequence type, virulence genes, antimicrobial resistance genes, and the impact of pneumococcal vaccination in Indonesia. The FASTQ raw files of these sequences are available under BioProject accession number PRJNA995903 and Sequence Read Archive accession numbers SRR25316461-SRR25316554. © 2024 The Authors
Bacteriology; Genes; Population statistics; RNA; Vaccines; Adult; Conjugate vaccine; Genome sequence data; Healthy child; Hospitalized patient; Indonesia; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Whole genome sequences; Whole genome sequencing; DNA sequences
Cipto Mangunkusumo Hospital, (F1/ETIK/PPM.00.02/2023); Faculty of Medicine University of Indonesia; National Research and Innovation Agency of the Republic of Indonesia; World Medical Association
Funding text 1: The study's limitation falls short of adequately representing the entirety of S. pneumoniae isolates in Indonesia's population. This study was reviewed and approved by The Ethic Committee of the Faculty of Medicine University of Indonesia – Cipto Mangunkusumo Hospital (No: 955/UN2.F1/ETIK/PPM.00.02/2023) following The Code of Ethics of the World Medical Association (Declaration of
Elsevier Inc.
23523409
Data paper
Q2
258
16574