Publikasi Scopus 2024 per tanggal 31 Mei 2024 (409 artikel)

137

Authors

Khoeri M.M.; Maladan Y.; Salsabila K.; Alimsardjono L.; Vermasari N.; Puspitasari I.; Yunita R.; Tafroji W.; Sarassari R.; Sari R.F.; Balqis S.A.; Wahid G.A.; Purwanto D.S.; Harimurti K.; Soebandrio A.; Safari D.

Author_Full_Names

Khoeri, Miftahuddin Majid (55994827400); Maladan, Yustinus (57204842592); Salsabila, Korrie (57192272141); Alimsardjono, Lindawati (27967530900); Vermasari, Naritha (58199460100); Puspitasari, Iva (57391069500); Yunita, Rina (56862337800); Tafroji, Wisnu (57118271600); Sarassari, Rosantia (57204038282); Sari, Ratna Fathma (58918622800); Balqis, Sarah Azhari (58919511400); Wahid, Ghina Athyah (58919958100); Purwanto, Diana Shinta (58122204800); Harimurti, Kuntjoro (23473513200); Soebandrio, Amin

Author S Id

55994827400; 57204842592; 57192272141; 27967530900; 58199460100; 57391069500; 56862337800; 57118271600; 57204038282; 58918622800; 58919511400; 58919958100; 58122204800; 23473513200; 8602893200; 23493586700

Title

Whole genome sequencing data of Streptococcus pneumoniae isolated from Indonesian population

Year

2024

Source Title

Data in Brief

Volume

Issue

Art No

110251

Page Start

Page End

Page Count

Cited By

Link

https://www.scopus.com/inward/record.uri?eid=2-s2.0-85186693540&doi=10.1016%2fj.dib.2024.110251&partnerID=40&md5=2b3d2e5eb7ff52793ce315c062230464

Affiliations

Eijkman Research Center for Molecular Biology, National Research and Innovation Agency, West Java, Cibinong, Indonesia; Doctoral program in Biomedical, Faculty of Medicine, University of Indonesia, Jakarta, Indonesia; Soetomo Hospital, East Java, Surabaya, Indonesia; Kariadi Hospital, Central Java, Semarang, Indonesia; Haji Adam Malik Hospital, North Sumatera, Medan, Indonesia; Department of Microbiology, Faculty of Medicine, Universitas Sumatera Utara, Medan, Indonesia; Department of Biochemistry, Faculty of Medicine, Sam Ratulangi University, North Sulawesi, Manado, Indonesia; Departement of Internal Medicine, Faculty of Medicine, University of Indonesia, Jakarta, Indonesia; Departement of Clinical Microbiology, Faculty of Medicine, University of Indonesia, Jakarta, Indonesia

Authors With Affiliations

Khoeri M.M., Eijkman Research Center for Molecular Biology, National Research and Innovation Agency, West Java, Cibinong, Indonesia, Doctoral program in Biomedical, Faculty of Medicine, University of Indonesia, Jakarta, Indonesia; Maladan Y., Eijkman Research Center for Molecular Biology, National Research and Innovation Agency, West Java, Cibinong, Indonesia; Salsabila K., Eijkman Research Center for Molecular Biology, National Research and Innovation Agency, West Java, Cibinong, Indonesia; Alimsardjono L., Soetomo Hospital, East Java, Surabaya, Indonesia; Vermasari N., Soetomo Hospital, East Java, Surabaya, Indonesia; Puspitasari I., Kariadi Hospital, Central Java, Semarang, Indonesia; Yunita R., Haji Adam Malik Hospital, North Sumatera, Medan, Indonesia, Department of Microbiology, Faculty of Medicine, Universitas Sumatera Utara, Medan, Indonesia; Tafroji W., Eijkman Research Center for Molecular Biology, National Research and Innovation Agency, West Java, Cibinong, Indonesia; Sarassari R., Eijkman Research Center for Molecular Biology, National Research and Innovation Agency, West Java, Cibinong, Indonesia; Sari R.F., Eijkman Research Center for Molecular Biology, National Research and Innovation Agency, West Java, Cibinong, Indonesia; Balqis S.A., Eijkman Research Center for Molecular Biology, National Research and Innovation Agency, West Java, Cibinong, Indonesia; Wahid G.A., Eijkman Research Center for Molecular Biology, National Research and Innovation Agency, West Java, Cibinong, Indonesia; Purwanto D.S., Department of Biochemistry, Faculty of Medicine, Sam Ratulangi University, North Sulawesi, Manado, Indonesia; Harimurti K., Departement of Internal Medicine, Faculty of Medicine, University of Indonesia, Jakarta, Indonesia; Soebandrio A., Departement of Clinical Microbiology, Faculty of Medicine, University of Indonesia, Jakarta, Indonesia; Safari D., Eijkman Research Center for Molecular Biology, National Research and Innovation Agency, West Java, Cibinong, Indonesia

Abstract

Streptococcus pneumoniae is the leading cause of bacterial pneumonia, bacteremia, and meningitis. Indonesia introduced the pneumococcal conjugate vaccine (PCV) nationwide in 2022. In this study, we present whole genome sequence (WGS) data of 94 S. pneumoniae isolates that were obtained from hospitalized patients, healthy children, and adult groups from different regions prior to PCV program in Indonesia. DNA sequences of S. pneumoniae were obtained using the TruSeq Nano DNA kit (Illumina NovaSeq6000 Platform). The genome data of S. pneumoniae features a 1,969,562 bp to 2,741,371 bp circular chromosome with 39–40% G+C content. The genome includes 1935–3319 coding sequences (CDS), 2 to 5 rRNA genes, 43 to 49 tRNA genes, and 56 to 71 ncRNA. These data will be useful for analyzing the serotype, sequence type, virulence genes, antimicrobial resistance genes, and the impact of pneumococcal vaccination in Indonesia. The FASTQ raw files of these sequences are available under BioProject accession number PRJNA995903 and Sequence Read Archive accession numbers SRR25316461-SRR25316554. © 2024 The Authors

Author Keywords

Adult; Healthy children; Hospitalized patient; Indonesia; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Whole-genome sequence

Index Keywords

Bacteriology; Genes; Population statistics; RNA; Vaccines; Adult; Conjugate vaccine; Genome sequence data; Healthy child; Hospitalized patient; Indonesia; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Whole genome sequences; Whole genome sequencing; DNA sequences

Funding Details

Cipto Mangunkusumo Hospital, (F1/ETIK/PPM.00.02/2023); Faculty of Medicine University of Indonesia; National Research and Innovation Agency of the Republic of Indonesia; World Medical Association

Funding Text

Funding text 1: The study's limitation falls short of adequately representing the entirety of S. pneumoniae isolates in Indonesia's population. This study was reviewed and approved by The Ethic Committee of the Faculty of Medicine University of Indonesia – Cipto Mangunkusumo Hospital (No: 955/UN2.F1/ETIK/PPM.00.02/2023) following The Code of Ethics of the World Medical Association (Declaration of

Publisher

Elsevier Inc.

Issn

23523409

Isbn

Pubmed Id

Document Type

Data paper

Sjr Best Quartile

Sjr

258

Sjr Rank

16574